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Somatic - Class in net.sf.varscan
A class for determining somatic status of variants from Normal/Tumor pileup files
Somatic(String[], boolean) - Constructor for class net.sf.varscan.Somatic
 
Somatic(String[]) - Constructor for class net.sf.varscan.Somatic
 
somatic(String[], HashMap<String, String>) - Static method in class net.sf.varscan.VarScan
Calls somatic/germline/LOH variants from normal and tumor pileup files
somaticFilter(String[], HashMap<String, String>) - Static method in class net.sf.varscan.VarScan
Filters variants by coverage, significance, frequency, etc.

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